institute of biotechnology >> brc >> bioinformatics >> internal >> workshops
 

Workshops

Genomic Sequence Data Analysis  
October 12 - 28 2020

This workshop covers three commonly used genomic sequence data analysis methods: (1) de novo whole genome assembly with long or short reads, (2) model-based gene prediction, and (3) reference genome guided variant calling. Each workshop participant will be assigned to a Linux server, and will have three weeks to finish several data analysis projects.   (Qi Sun, Robert Bukowski)

Machine allocation.

Recordings from this workshop are available online (restricted to workshop participants only).

 

Workshop Outline  
Session 1 Oct 12 2020 3:30PM - 5:00PM Zoom
De novo genome assembly with long or short reads;  Assembly quality assessment. 
Session 2 Oct 14 2020 3:30PM - 5:00PM Zoom
Hands-on session
Session 3 Oct 19 2020 3:30PM - 5:00PM Zoom
Gene prediction using Braker.
Session 4 Oct 21 2020 3:30PM - 5:00PM Zoom
Hands-on session
Session 5 Oct 26 2020 3:30PM - 5:00PM Zoom
Variant calling with Illumina whole genome shotgun sequence data.  
Session 6 Oct 28 2020 3:30PM - 5:00PM Zoom
Hands-on session
 
Website credentials: login  Web Accessibility Help