RNA-seq Data Analysis  
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This is a virtual workshop, you can participate by reading workshop materials, watching video presentations and carrying out exercises on an assigned BioHPC Cloud server (server assignments are listed here). If you need help, please sign up for our Office Hours. The server assigned to you for hands-on exercises will be available for a limited time, see server assignment page or bottom of this page for details. Please note, the server is assigned to you for hands-on exercises, NOT heavy computing, using the server for workshop unrelated computing is not allowed and will result in assignment termination.

This workshop focuses on RNA-seq data analysis. The three-week workshop will cover RNA-seq read alignment, quality control, gene expression quantification, the statistics of RNA-seq data analysis, and gene function/pathway enrichment analysis. Each workshop participant will be assigned to a Linux server, and will have three weeks to finish several data analysis projects. (Qi Sun, Jeff Glaubitz)

Workshop videos:
Session 1
Session 2

Session 3
Session 4
Session 5
Session 6

Workshop server assignment


Server assignment length 10 days  
Session 1 Nov 2 2020 3:30PM - 5:00PM Zoom
Introduction to RNA-seq, sequence read alignment, expression quantification and data QC.
Session 2 Nov 4 2020 3:30PM - 5:00PM Zoom
Hands-on session
Session 3 Nov 9 2020 3:30PM - 5:00PM Zoom
Statistics of RNA-seq data analysis.
Session 4 Nov 11 2020 3:30PM - 5:00PM Zoom
Hands-on session
Session 5 Nov 16 2020 3:30PM - 5:00PM Zoom
Gene function annotation and gene functional enrichment analysis.
Session 6 Nov 18 2020 3:30PM - 5:00PM Zoom
Hands-on session
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